Basic Information
Locus ID:
gene:TRIDC2AG051950
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 596625133 | 596627073 | - | gene:TRIDC2AG051950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 64,839.24 Da | 43.84 | 81.71 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 10 | 54 | 7.58148E-9 | - |
| Pfam | PF17123 | RING-like zinc finger | 10 | 39 | 9.9E-10 | IPR001841 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 529 | 574 | 5.5E-8 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 175 | 360 | 9.0E-20 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 171 | 363 | 8.9E-31 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 70 | 1.94E-12 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 175 | 364 | 2.6E-43 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 6.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 10 | 53 | 1.5E-6 | IPR001841 |
| SMART | SM00327 | VWA_4 | 173 | 359 | 1.6E-18 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 175 | 370 | 14.021512 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 10 | 54 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 121 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037481680.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B2P7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG051950.