Basic Information
Locus ID:
gene:TRIDC2AG050270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 580911491 | 580916271 | + | gene:TRIDC2AG050270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 78,772.02 Da | 47.45 | 93.60 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 282 | 324 | 6.71815E-25 | - |
| Pfam | PF04564 | U-box domain | 279 | 348 | 7.0E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 463 | 709 | 2.8E-26 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 270 | 354 | 1.14E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 444 | 566 | 5.5E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 351 | 1.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 567 | 716 | 2.2E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 281 | 344 | 7.5E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 477 | 521 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 562 | 605 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 523 | 561 | 11.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 277 | 351 | 41.169655 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27910.1 | plant U-box 45. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037478271.1 | U-box domain-containing protein 7-like [Triticum dicoccoides] | 0 |
| Q9C7G1 | U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B2B2 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG050270.