Basic Information
Locus ID:
gene:TRIDC2AG049050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ig-like domain from next to BRCA1 gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 567880113 | 567884617 | - | gene:TRIDC2AG049050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 90,998.51 Da | 51.40 | 76.17 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14947 | NBR1_like | 480 | 592 | 6.6786E-45 | IPR032350 |
| CDD | cd14319 | UBA_NBR1 | 791 | 828 | 1.24962E-11 | - |
| Pfam | PF00564 | PB1 domain | 15 | 83 | 5.2E-8 | IPR000270 |
| Pfam | PF00569 | Zinc finger, ZZ type | 413 | 449 | 5.0E-8 | IPR000433 |
| Pfam | PF16158 | Ig-like domain from next to BRCA1 gene | 490 | 591 | 4.5E-29 | IPR032350 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 11 | 95 | 4.49E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 408 | 466 | 1.15E-11 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 478 | 596 | 5.3E-28 | IPR013783 |
| Gene3D | G3DSA:1.10.8.10 | - | 785 | 833 | 1.5E-14 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 407 | 463 | 2.5E-11 | IPR043145 |
| Gene3D | G3DSA:3.10.20.90 | - | 12 | 98 | 4.1E-14 | - |
| SMART | SM00666 | PB1_new | 13 | 98 | 2.3E-5 | IPR000270 |
| SMART | SM00291 | zz_5 | 412 | 458 | 4.9E-6 | IPR000433 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 789 | 827 | 8.956426 | IPR015940 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 13 | 98 | 15.814608 | IPR000270 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 412 | 460 | 9.574841 | IPR000433 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 228 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24690.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. | 0 |
| RefSeq | XP_037478181.1 | protein NBR1 homolog isoform X2 [Triticum dicoccoides] | 0 |
| M1BJF6 | Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B0Q7 | PB1 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG049050.