Basic Information
Locus ID:
gene:TRIDC2AG047920
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
PUX4
Description:
SEP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 556978191 | 556982653 | + | gene:TRIDC2AG047920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 36,342.52 Da | 60.99 | 55.28 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01770 | UBX_UBXN2 | 270 | 340 | 2.93406E-40 | - |
| Pfam | PF08059 | SEP domain | 158 | 231 | 5.9E-26 | IPR012989 |
| Pfam | PF00789 | UBX domain | 267 | 340 | 9.4E-17 | IPR001012 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 145 | 238 | 1.12E-28 | IPR036241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 226 | 339 | 2.53E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 218 | 341 | 3.9E-39 | - |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 152 | 215 | 4.2E-26 | IPR036241 |
| SMART | SM00553 | faf_3 | 150 | 243 | 1.0E-41 | IPR012989 |
| SMART | SM00166 | ubx_3 | 263 | 340 | 3.9E-8 | IPR001012 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 153 | 218 | 33.18998 | IPR012989 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 264 | 340 | 19.596144 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 40 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04210.1 | plant UBX domain containing protein 4. Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) | 0 |
| RefSeq | XP_037478109.1 | plant UBX domain-containing protein 4-like [Triticum dicoccoides] | 0 |
| Q8RWU7 | Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453C5R7 | UBX domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG047920.