Basic Information
Locus ID:
gene:TRIDC2AG043280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 510042327 | 510044027 | + | gene:TRIDC2AG043280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 50,820.88 Da | 49.98 | 95.00 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 77 | 118 | 8.69876E-24 | - |
| Pfam | PF04564 | U-box domain | 73 | 142 | 3.9E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 141 | 2.74E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 263 | 469 | 4.89E-8 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 253 | 486 | 3.5E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 145 | 1.5E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 76 | 139 | 6.2E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 72 | 146 | 37.71983 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64660.1 | CYS, MET, PRO, and GLY protein 2. | 0 |
| RefSeq | XP_037477812.1 | U-box domain-containing protein 27-like [Triticum dicoccoides] | 0 |
| Q9FLF4 | U-box domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=PUB27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6AZ65 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG043280.