Basic Information
Locus ID:
gene:TRIDC2AG043180
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 508868178 | 508869698 | - | gene:TRIDC2AG043180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 47,159.83 Da | 41.21 | 95.09 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 19 | 62 | 3.14509E-22 | - |
| Pfam | PF04564 | U-box domain | 15 | 88 | 1.4E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 212 | 398 | 4.34E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 93 | 1.67E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 409 | 6.2E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 93 | 3.1E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 18 | 84 | 1.8E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 14 | 91 | 36.463741 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037477805.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6AYN7 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG043180.