Basic Information
Locus ID:
gene:TRIDC2AG040800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Vacuolar protein sorting protein 11 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 467440193 | 467445435 | + | gene:TRIDC2AG040800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 107,726.11 Da | 39.42 | 87.72 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16688 | RING-H2_Vps11 | 862 | 902 | 1.02056E-21 | - |
| Pfam | PF00637 | Region in Clathrin and VPS | 406 | 522 | 3.6E-14 | IPR000547 |
| Pfam | PF12451 | Vacuolar protein sorting protein 11 C terminal | 904 | 946 | 8.2E-14 | IPR024763 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 35 | 332 | 1.25E-6 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 863 | 904 | 3.21E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 346 | 641 | 1.1E-7 | IPR011990 |
| PIRSF | PIRSF007860 | Vps11 | 569 | 953 | 2.3E-104 | IPR016528 |
| PIRSF | PIRSF007860 | Vps11 | 1 | 576 | 7.3E-177 | IPR016528 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 864 | 899 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 398 | 549 | 25.45709 | IPR000547 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 567 | 778 | 11.564754 | IPR000547 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 671 | - | - |
| Coils | Coil | Coil | 821 | 855 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05170.1 | vacuolar protein sorting 11. Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. | 0 |
| RefSeq | XP_037477616.1 | vacuolar protein-sorting-associated protein 11 homolog [Triticum dicoccoides] | 0 |
| Q9SJ40 | Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6AZD6 | Vacuolar protein sorting-associated protein 11 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG040800.