Basic Information
Locus ID:
gene:TRIDC2AG039890
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 453642410 | 453645497 | + | gene:TRIDC2AG039890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 43,951.81 Da | 55.34 | 91.49 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 53 | 3.01428E-19 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 222 | 258 | 3.1E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 7 | 77 | 5.7E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 103 | 381 | 9.36E-33 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 80 | 1.92E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 86 | 383 | 4.3E-31 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 82 | 8.1E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 73 | 1.8E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 80 | 36.932564 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07360.1 | plant U-box 9. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037477562.1 | U-box domain-containing protein 9-like [Triticum dicoccoides] | 0 |
| Q9SRT0 | U-box domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6AYC3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG039890.