Basic Information
Locus ID:
gene:TRIDC2AG038060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PFU (PLAA family ubiquitin binding)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 419577593 | 419588689 | - | gene:TRIDC2AG038060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 87,567.52 Da | 32.36 | 91.04 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 51 | 334 | 9.11757E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 334 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 297 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 178 | 7.1E-5 | IPR001680 |
| Pfam | PF09070 | PFU (PLAA family ubiquitin binding) | 381 | 490 | 6.5E-36 | IPR015155 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 256 | 5.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 85 | 0.036 | IPR001680 |
| Pfam | PF08324 | PUL domain | 528 | 793 | 1.4E-54 | IPR013535 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 346 | 3.89E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 44 | 354 | 1.2E-75 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 526 | 797 | 8.8E-65 | IPR011989 |
| Gene3D | G3DSA:3.10.20.870 | - | 421 | 493 | 1.3E-25 | IPR038122 |
| SMART | SM00320 | WD40_4 | 180 | 218 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 257 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 138 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 3.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 297 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 86 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 3.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 218 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 297 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 178 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 256 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 85 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS51394 | PFU domain profile. | 401 | 497 | 34.070587 | IPR015155 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 101 | 147 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS51396 | PUL domain profile. | 526 | 797 | 27.927544 | IPR013535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 297 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 266 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 125 | 139 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 205 | 219 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 284 | 298 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 1.8E-5 | IPR020472 |
| Coils | Coil | Coil | 727 | 747 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044457106.1 | phospholipase A-2-activating protein-like [Triticum aestivum] | 0 |
| P27612 | Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4 | 0 | |
| TrEMBL | A0A453BNR2 | Phospholipase A-2-activating protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG038060.