Basic Information
Locus ID:
gene:TRIDC2AG031260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 271779950 | 271805824 | - | gene:TRIDC2AG031260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 62,366.78 Da | 48.19 | 101.02 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 328 | 372 | 3.3E-8 | IPR001841 |
| Pfam | PF02845 | CUE domain | 520 | 558 | 1.3E-8 | IPR003892 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 378 | 2.69E-17 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 506 | 557 | 7.7E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 383 | 5.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 330 | 371 | 5.4E-6 | IPR001841 |
| SMART | SM00546 | cue_7 | 518 | 559 | 2.2E-5 | IPR003892 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 330 | 372 | 12.1057 | IPR001841 |
| ProSiteProfiles | PS51140 | CUE domain profile. | 518 | 559 | 13.185822 | IPR003892 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25230.1 | RPM1 interacting protein 2. RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1. | 0 |
| RefSeq | XP_037477018.1 | E3 ubiquitin protein ligase RIN2-like [Triticum dicoccoides] | 0 |
| Q8VYC8 | E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana OX=3702 GN=RIN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TGS3 | E3 ubiquitin protein ligase RIN2 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG031260.