Basic Information
Locus ID:
gene:TRIDC2AG030400
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Transmembrane E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 238636372 | 238642715 | + | gene:TRIDC2AG030400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 65,105.46 Da | 49.04 | 93.62 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 523 | 568 | 5.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 504 | 572 | 2.36E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 520 | 574 | 1.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 524 | 567 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 524 | 568 | 12.459772 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037477465.1 | transmembrane E3 ubiquitin-protein ligase FLY1-like [Triticum dicoccoides] | 0 |
| Q5PP23 | Transmembrane E3 ubiquitin-protein ligase FLY1 OS=Arabidopsis thaliana OX=3702 GN=FLY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TG66 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG030400.