Basic Information
Locus ID:
gene:TRIDC2AG030000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 225903107 | 225910118 | - | gene:TRIDC2AG030000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 95,123.56 Da | 57.41 | 77.57 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 664 | 800 | 2.22957E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 143 | 493 | 1.63667E-78 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 591 | 631 | 1.0E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 158 | 568 | 3.7E-49 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 678 | 789 | 4.1E-12 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 493 | 5.03E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 589 | 636 | 1.93E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 365 | 844 | 2.06E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 145 | 287 | 2.8E-21 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 298 | 509 | 5.1E-24 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 510 | 845 | 4.9E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 582 | 658 | 8.2E-12 | IPR013083 |
| SMART | SM00487 | ultradead3 | 139 | 427 | 1.0E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 706 | 789 | 1.3E-14 | IPR001650 |
| SMART | SM00184 | ring_2 | 592 | 631 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 592 | 632 | 12.149959 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 156 | 421 | 15.457268 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 675 | 835 | 13.82023 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 607 | 616 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05120.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_037476968.1 | DNA repair protein RAD16-like [Triticum dicoccoides] | 0 |
| P31244 | DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TH39 | ATP-dependent helicase rhp16 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG030000.