Basic Information
Locus ID:
gene:TRIDC2AG022730
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 141045912 | 141050494 | + | gene:TRIDC2AG022730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 47,596.17 Da | 37.83 | 81.34 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 110 | 430 | 5.77143E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 235 | 4.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 393 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 305 | 0.0016 | IPR001680 |
| Pfam | PF08154 | NLE (NUC135) domain | 13 | 80 | 7.4E-17 | IPR012972 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 184 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 108 | 432 | 3.46E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 439 | 1.2E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 197 | 236 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 434 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 305 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 138 | 0.08 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 393 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 185 | 1.4E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 204 | 238 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 360 | 396 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 204 | 245 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 310 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 314 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 402 | 11.611251 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 380 | 394 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 223 | 237 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 380 | 394 | 1.2E-5 | IPR020472 |
| Hamap | MF_03029 | Ribosome biogenesis protein @gn(WDR12) [WDR12]. | 7 | 437 | 30.711618 | IPR028599 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037476485.1 | ribosome biogenesis protein WDR12 homolog [Triticum dicoccoides] | 0 |
| Q8H594 | Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=WDR12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453B5M0 | Ribosome biogenesis protein WDR12 homolog OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG022730.