Basic Information
Locus ID:
gene:TRIDC2AG022360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 137665599 | 137667634 | + | gene:TRIDC2AG022360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 57,897.49 Da | 43.70 | 79.24 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 234 | 512 | 2.31466E-88 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 235 | 260 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 343 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 427 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 385 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 512 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 302 | 7.9E-5 | IPR001680 |
| Pfam | PF08799 | pre-mRNA processing factor 4 (PRP4) like | 99 | 127 | 7.3E-13 | IPR014906 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 222 | 511 | 2.15E-87 | IPR036322 |
| SUPERFAMILY | SSF158230 | PRP4-like | 78 | 131 | 5.75E-15 | IPR036285 |
| Gene3D | G3DSA:4.10.280.110 | - | 68 | 147 | 4.9E-14 | IPR036285 |
| Gene3D | G3DSA:2.130.10.10 | - | 394 | 522 | 1.6E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 393 | 5.3E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 1.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 9.1E-8 | IPR001680 |
| SMART | SM00500 | pr04_2 | 94 | 143 | 1.5E-15 | IPR014906 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 260 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 427 | 7.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 470 | 0.0019 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 302 | 11.022865 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 353 | 390 | 12.024679 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 512 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 302 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 269 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 512 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 353 | 394 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 436 | 16.156128 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 347 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 395 | 430 | 12.26195 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 437 | 479 | 10.608706 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 372 | 386 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 330 | 344 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 414 | 428 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 289 | 303 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 414 | 428 | 1.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 59 | - | - |
| Coils | Coil | Coil | 64 | 84 | - | - |
| Coils | Coil | Coil | 114 | 134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41500.1 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | 0 |
| RefSeq | XP_037476454.1 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Triticum dicoccoides] | 0 |
| O22212 | U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6AV20 | SFM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG022360.