Basic Information
Locus ID:
gene:TRIDC2AG021860
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Alfin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 131988879 | 131994197 | - | gene:TRIDC2AG021860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 30,247.28 Da | 49.25 | 47.77 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 209 | 256 | 3.97216E-28 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 210 | 257 | 1.3E-10 | IPR019787 |
| Pfam | PF12165 | Alfin | 9 | 136 | 3.1E-67 | IPR021998 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 200 | 261 | 2.15E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 257 | 1.2E-26 | IPR013083 |
| SMART | SM00249 | PHD_3 | 209 | 257 | 5.0E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 207 | 259 | 9.2497 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 210 | 256 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 159 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20510.1 | alfin-like 5. AL5 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_044455941.1 | PHD finger protein ALFIN-LIKE 9-like isoform X1 [Triticum aestivum] | 0 |
| Q6YTY3 | PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0608400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6AUY5 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG021860.