Basic Information
Locus ID:
gene:TRIDC2AG020750
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Helicase associated domain (HA2) Add an annotation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 119796284 | 119814867 | + | gene:TRIDC2AG020750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 194,396.56 Da | 47.23 | 87.78 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17917 | DEXHc_RHA-like | 279 | 436 | 1.12625E-55 | - |
| CDD | cd18791 | SF2_C_RHA | 441 | 610 | 6.00581E-61 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1676 | 1720 | 2.8E-6 | IPR002867 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 481 | 602 | 1.4E-13 | IPR001650 |
| Pfam | PF04408 | Helicase associated domain (HA2) | 663 | 757 | 2.9E-8 | IPR007502 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1595 | 1655 | 3.1E-8 | IPR002867 |
| Pfam | PF07717 | Oligonucleotide/oligosaccharide-binding (OB)-fold | 825 | 900 | 5.8E-8 | IPR011709 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1605 | 1661 | 6.0E-6 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1083 | 1209 | 4.16E-5 | IPR035979 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1675 | 1724 | 1.35E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1522 | 1600 | 2.26E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 252 | 780 | 3.81E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1080 | - | 645 | 750 | 1.5E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 440 | 621 | 1.2E-52 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1750 | - | 1651 | 1730 | 2.0E-16 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 244 | 439 | 5.4E-61 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1518 | 1601 | 2.2E-8 | IPR013083 |
| SMART | SM00487 | ultradead3 | 261 | 446 | 6.1E-29 | IPR014001 |
| SMART | SM00647 | ibrneu5 | 1587 | 1655 | 2.8E-5 | IPR002867 |
| SMART | SM00490 | helicmild6 | 504 | 602 | 6.7E-18 | IPR001650 |
| SMART | SM00847 | ha2_5 | 662 | 758 | 3.5E-11 | IPR007502 |
| SMART | SM00647 | ibrneu5 | 1656 | 1720 | 0.032 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1523 | 1565 | 9.671455 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 273 | 437 | 18.588392 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 476 | 642 | 14.552202 | IPR001650 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 1519 | 1727 | 29.047506 | IPR044066 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 379 | 388 | - | IPR002464 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1539 | 1548 | - | IPR017907 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 1707 | 1728 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10370.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037476335.1 | ATP-dependent RNA helicase DEAH12, chloroplastic-like [Triticum dicoccoides] | 0 |
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6AVK2 | RNA helicase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG020750.