Basic Information
Locus ID:
gene:TRIDC2AG018140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 93741638 | 93747171 | - | gene:TRIDC2AG018140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 85,629.65 Da | 52.55 | 94.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 593 | 723 | 4.8693E-55 | - |
| CDD | cd16536 | RING-HC_RNF10 | 523 | 561 | 4.46693E-14 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 596 | 712 | 1.5E-15 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 520 | 566 | 5.2E-10 | - |
| Pfam | PF08797 | HIRAN domain | 2 | 63 | 6.0E-8 | IPR014905 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 147 | 481 | 2.0E-78 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 133 | 407 | 7.79E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 420 | 770 | 2.93E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 516 | 568 | 1.06E-15 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 178 | 408 | 9.5E-53 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 422 | 772 | 3.8E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.70.2330 | - | 1 | 88 | 3.9E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 509 | 572 | 6.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 523 | 561 | 1.3E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 627 | 712 | 4.0E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 140 | 376 | 9.5E-23 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 186 | 369 | 17.060555 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 523 | 562 | 12.651561 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 596 | 765 | 16.170507 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 538 | 547 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 240 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05130.1 | DNA/RNA helicase protein. | 0 |
| RefSeq | XP_037476121.1 | putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Triticum dicoccoides] | 0 |
| Q9FF61 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana OX=3702 GN=At5g05130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6AU24 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG018140.