Basic Information
Locus ID:
gene:TRIDC2AG016340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 83242800 | 83254953 | - | gene:TRIDC2AG016340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 127,215.03 Da | 54.96 | 73.00 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12931 | Sec23-binding domain of Sec16 | 601 | 794 | 1.6E-8 | IPR024298 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 386 | 1.69E-47 | IPR036322 |
| Gene3D | G3DSA:1.20.940.10 | Functional domain of the splicing factor Prp18 | 1059 | 1172 | 6.3E-27 | - |
| Gene3D | G3DSA:1.25.40.1030 | - | 405 | 817 | 9.6E-116 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 387 | 1.2E-96 | IPR015943 |
| SMART | SM00320 | WD40_4 | 254 | 298 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 251 | 0.56 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 385 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 201 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 342 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 149 | 52.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 204 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 204 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 351 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 260 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 238 | 252 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1028 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 846 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037476020.1 | protein transport protein SEC31 homolog B-like isoform X3 [Triticum dicoccoides] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A453AUT7 | Sec16_C domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG016340.