Basic Information
Locus ID:
gene:TRIDC2AG015610
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 78502236 | 78506596 | + | gene:TRIDC2AG015610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 31,578.19 Da | 71.35 | 93.17 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 172 | 218 | 7.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 218 | 4.91E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 224 | 5.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 212 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 213 | 12.002429 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 190 | 199 | - | IPR017907 |
| Coils | Coil | Coil | 38 | 58 | - | - |
| Coils | Coil | Coil | 150 | 170 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01520.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037475974.1 | E3 ubiquitin-protein ligase AIRP2-like [Triticum dicoccoides] | 0 |
| Q9M022 | E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5UD27 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS1137 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG015610.