Basic Information
Locus ID:
gene:TRIDC2AG015590
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 78407468 | 78411666 | - | gene:TRIDC2AG015590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 50,274.93 Da | 39.21 | 79.10 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 172 | 461 | 3.0967E-75 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 206 | 8.8E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 334 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 461 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 291 | 3.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 249 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 419 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 378 | 1.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 462 | 1.56E-79 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 122 | 464 | 3.7E-95 | IPR015943 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 419 | 7.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 336 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 422 | 461 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 249 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 291 | 8.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 164 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 1.8E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 429 | 466 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 379 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 345 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 173 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 300 | 16.156128 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 429 | 466 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 258 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 387 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 291 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 428 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 12.446495 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 387 | 419 | 9.99469 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 365 | 379 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 278 | 292 | 4.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 365 | 379 | 4.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 406 | 420 | 4.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 123 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037475973.1 | angio-associated migratory cell protein-like [Triticum dicoccoides] | 0 |
| Q13685 | Angio-associated migratory cell protein OS=Homo sapiens OX=9606 GN=AAMP PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6C3K9 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG015590.