Basic Information
Locus ID:
gene:TRIDC2AG012460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 60486889 | 60499647 | + | gene:TRIDC2AG012460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 185,824.08 Da | 47.60 | 83.21 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1435 | 1576 | 1.11652E-32 | - |
| CDD | cd15517 | PHD_TCF19_like | 411 | 451 | 3.90126E-8 | - |
| CDD | cd18070 | DEXQc_SHPRH | 288 | 695 | 1.48434E-85 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1446 | 1565 | 3.0E-5 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 291 | 789 | 1.3E-90 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 263 | 694 | 2.23E-42 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 401 | 445 | 7.97E-9 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1347 | 1402 | 1.24E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 601 | 1589 | 2.57E-31 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 484 | 696 | 1.4E-33 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1339 | 1414 | 1.3E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 399 | 452 | 8.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1415 | 1626 | 6.0E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 352 | 394 | 2.5E-5 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1469 | 1565 | 2.4E-4 | IPR001650 |
| SMART | SM00249 | PHD_3 | 408 | 490 | 2.8E-8 | IPR001965 |
| SMART | SM00184 | ring_2 | 1352 | 1397 | 6.5E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 284 | 665 | 7.6E-19 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1441 | 1617 | 9.931319 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 465 | 657 | 11.659678 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1352 | 1398 | 10.748424 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 409 | 489 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1620 | 1648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40770.1 | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding. | 0 |
| RefSeq | XP_037475762.1 | E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Triticum dicoccoides] | 0 |
| Q149N8 | E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens OX=9606 GN=SHPRH PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7TDD7 | E3 ubiquitin-protein ligase SHPRH OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG012460.