Basic Information
Locus ID:
gene:TRIDC2AG010810
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 50595336 | 50601335 | + | gene:TRIDC2AG010810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 111,009.73 Da | 79.52 | 56.03 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16574 | RING-HC_Topors | 561 | 603 | 5.99147E-18 | - |
| Pfam | PF13639 | Ring finger domain | 560 | 603 | 7.3E-7 | IPR001841 |
| Pfam | PF00628 | PHD-finger | 654 | 699 | 3.0E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 628 | 698 | 5.76E-15 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 560 | 609 | 4.95E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 622 | 703 | 8.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 556 | 617 | 8.9E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 653 | 698 | 3.8E-8 | IPR001965 |
| SMART | SM00184 | ring_2 | 561 | 602 | 2.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 561 | 603 | 12.297489 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 651 | 700 | 9.739201 | IPR019787 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 580 | 589 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 217 | - | - |
| Coils | Coil | Coil | 214 | 234 | - | - |
| Coils | Coil | Coil | 129 | 149 | - | - |
| Coils | Coil | Coil | 171 | 191 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_044455183.1 | trichohyalin-like [Triticum aestivum] | 0 |
| Q23541 | Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans OX=6239 GN=rbr-2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6ARX8 | PHD and RING finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG010810.