Basic Information
Locus ID:
gene:TRIDC2AG009420
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 41864644 | 41874601 | - | gene:TRIDC2AG009420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 106,424.72 Da | 42.29 | 92.39 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 597 | 643 | 4.3E-5 | IPR024977 |
| SUPERFAMILY | SSF117289 | Nucleoporin domain | 177 | 305 | 1.49E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 654 | 1.19E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 364 | 3.2E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 482 | 827 | 6.7E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 23 | 163 | 2.8E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 63 | 103 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 276 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 560 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 627 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 20 | 62 | 6.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 766 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05570.2 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037475607.1 | uncharacterized protein LOC119353121 isoform X1 [Triticum dicoccoides] | 0 |
| Q8K400 | Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6AS10 | V-SNARE coiled-coil homology domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG009420.