Basic Information
Locus ID:
gene:TRIDC2AG008140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
HIRAN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2A | 36187244 | 36193269 | - | gene:TRIDC2AG008140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 129,897.93 Da | 45.45 | 86.42 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1004 | 1129 | 1.55523E-58 | - |
| CDD | cd16449 | RING-HC | 935 | 975 | 2.63652E-11 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 579 | 802 | 6.92892E-95 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 516 | 881 | 3.5E-80 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1009 | 1118 | 2.6E-17 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 933 | 981 | 1.4E-9 | - |
| Pfam | PF08797 | HIRAN domain | 286 | 385 | 2.4E-10 | IPR014905 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 811 | 1165 | 6.11E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 934 | 982 | 1.1E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 499 | 802 | 1.28E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 567 | 814 | 4.2E-56 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 818 | 1171 | 7.8E-70 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 917 | 988 | 1.1E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 935 | 975 | 2.1E-9 | IPR001841 |
| SMART | SM00910 | HIRAN_2 | 279 | 389 | 9.0E-5 | IPR014905 |
| SMART | SM00490 | helicmild6 | 1035 | 1118 | 2.1E-20 | IPR001650 |
| SMART | SM00487 | ultradead3 | 509 | 772 | 9.0E-27 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 935 | 976 | 12.356501 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1006 | 1171 | 15.861784 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 572 | 764 | 17.330912 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 951 | 960 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 158 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43530.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_044455015.1 | DNA repair protein RAD5B-like [Triticum aestivum] | 0 |
| Q9FIY7 | DNA repair protein RAD5B OS=Arabidopsis thaliana OX=3702 GN=RAD5B PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6ARN0 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2AG008140.