Basic Information
Locus ID:
gene:TRIDC1BG067250
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc-finger of the MIZ type in Nse subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 653874780 | 653877713 | - | gene:TRIDC1BG067250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 26,672.51 Da | 50.10 | 78.17 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16651 | SPL-RING_NSE2 | 151 | 219 | 1.85823E-21 | IPR004181 |
| Pfam | PF11789 | Zinc-finger of the MIZ type in Nse subunit | 138 | 198 | 4.8E-12 | IPR004181 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 222 | 4.52E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 230 | 3.2E-15 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 254 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15150.1 | RING/U-box superfamily protein. Encodes a SUMO E3 ligase that regulates endocycle onset and meristem maintenance. | 0 |
| RefSeq | XP_044376903.1 | E3 SUMO-protein ligase MMS21-like isoform X1 [Triticum aestivum] | 0 |
| Q8GYH7 | E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana OX=3702 GN=MMS21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Z5I8 | SP-RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG067250.