Basic Information
Locus ID:
gene:TRIDC1BG060340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 611782690 | 611785968 | - | gene:TRIDC1BG060340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 45,724.04 Da | 40.41 | 85.83 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 85 | 413 | 4.37822E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 247 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 413 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 371 | 9.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 85 | 120 | 4.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 169 | 204 | 4.8E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 414 | 6.04E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 420 | 1.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 44 | 117 | 5.9E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 118 | 306 | 6.4E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 162 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 78 | 67.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 371 | 4.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 120 | 6.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 204 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 249 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 330 | 0.36 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 88 | 129 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 172 | 207 | 13.421944 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 380 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 88 | 120 | 12.525585 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 172 | 213 | 16.757654 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 171 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 420 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 420 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 371 | 10.917412 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 191 | 205 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 358 | 372 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 191 | 205 | 4.7E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_047049691.1 | angio-associated migratory cell protein-like [Lolium rigidum] | 0 |
| Q3SZK1 | Angio-associated migratory cell protein OS=Bos taurus OX=9913 GN=AAMP PE=2 SV=1 | 0 | |
| TrEMBL | A0A452ZP48 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG060340.