Basic Information
Locus ID:
gene:TRIDC1BG055610
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 576597704 | 576602765 | + | gene:TRIDC1BG055610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 110,858.60 Da | 53.77 | 62.19 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17734 | BRCT_Bard1_rpt1 | 793 | 867 | 3.14934E-29 | - |
| Pfam | PF00533 | BRCA1 C Terminus (BRCT) domain | 802 | 866 | 2.7E-7 | IPR001357 |
| Pfam | PF13639 | Ring finger domain | 35 | 74 | 1.3E-8 | IPR001841 |
| Pfam | PF13771 | PHD-like zinc-binding domain | 667 | 745 | 1.4E-9 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 842 | 1011 | 1.05E-8 | IPR036420 |
| SUPERFAMILY | SSF52113 | BRCT domain | 793 | 885 | 3.2E-22 | IPR036420 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 98 | 1.94E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 623 | 748 | 3.8E-23 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 790 | 896 | 5.3E-29 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 108 | 6.0E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 901 | 1007 | 3.0E-19 | IPR036420 |
| SMART | SM00292 | BRCT_7 | 902 | 1007 | 0.017 | IPR001357 |
| SMART | SM00184 | ring_2 | 36 | 73 | 1.5E-6 | IPR001841 |
| SMART | SM00292 | BRCT_7 | 786 | 869 | 3.0E-11 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 74 | 12.607302 | IPR001841 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 626 | 746 | 20.426231 | IPR034732 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 804 | 879 | 12.42154 | IPR001357 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 900 | 1012 | 10.86362 | IPR001357 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 191 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21070.1 | breast cancer susceptibility1. Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. | 0 |
| RefSeq | XP_037472845.1 | protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Triticum dicoccoides] | 0 |
| Q8RXD4 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Z1G9 | RING-type E3 ubiquitin transferase BRCA1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG055610.