Basic Information
Locus ID:
gene:TRIDC1BG053200
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 558716583 | 558721032 | + | gene:TRIDC1BG053200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 45,546.44 Da | 56.66 | 67.45 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16531 | RING-HC_RING1_like | 34 | 74 | 2.8153E-24 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 33 | 73 | 6.0E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 105 | 1.16E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 97 | 2.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 73 | 8.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 74 | 12.002429 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 50 | 59 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 228 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.1 | RING 1A. Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | 0 |
| RefSeq | XP_037472728.1 | putative E3 ubiquitin-protein ligase RING1a [Triticum dicoccoides] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B5Y418 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG053200.