Basic Information
Locus ID:
gene:TRIDC1BG050410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 537202828 | 537204900 | + | gene:TRIDC1BG050410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 73,310.53 Da | 53.07 | 103.12 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 291 | 333 | 2.70263E-24 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 420 | 458 | 1.2E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 288 | 357 | 5.9E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 361 | 1.82E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 406 | 658 | 9.98E-25 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 386 | 659 | 1.4E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 362 | 1.0E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 290 | 353 | 3.7E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 461 | 502 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 419 | 459 | 0.0018 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 286 | 360 | 43.938358 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 430 | 472 | 13.212399 | IPR000225 |
| Coils | Coil | Coil | 196 | 216 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037472560.1 | U-box domain-containing protein 16-like [Triticum dicoccoides] | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Z0D8 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG050410.