Basic Information
Locus ID:
gene:TRIDC1BG049780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 531924934 | 531927249 | + | gene:TRIDC1BG049780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 60,876.12 Da | 77.58 | 64.94 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 232 | 276 | 4.18382E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 233 | 274 | 2.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 280 | 7.9E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 308 | 4.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 234 | 274 | 3.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 275 | 13.861307 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 249 | 258 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 430 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037472494.1 | uncharacterized protein LOC119348582 [Triticum dicoccoides] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZBY6 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG049780.