Basic Information
Locus ID:
gene:TRIDC1BG042990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 468458965 | 468466145 | + | gene:TRIDC1BG042990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 51,399.28 Da | 42.18 | 70.89 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 443 | 8.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 289 | 323 | 0.0081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 278 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 235 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 361 | 404 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 447 | 2.66E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 367 | 4.5E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 375 | 459 | 6.6E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 278 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 132 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 447 | 6.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 7.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 235 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 404 | 0.42 | IPR001680 |
| PIRSF | PIRSF038135 | WD_rpt_23 | 1 | 458 | 8.9E-196 | IPR017399 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 415 | 447 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 278 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 278 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 244 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 325 | 9.335602 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 310 | 324 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 6.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037470083.1 | LEC14B protein-like [Triticum dicoccoides] | 0 |
| Q40153 | LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Z045 | LEC14B homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG042990.