Basic Information
Locus ID:
gene:TRIDC1BG042270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 461192182 | 461197715 | - | gene:TRIDC1BG042270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 28,852.47 Da | 55.60 | 83.98 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 205 | 245 | 6.08765E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 204 | 250 | 2.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 251 | 5.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 255 | 4.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 244 | 0.002 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 245 | 11.279532 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048538214.1 | probable E3 ubiquitin-protein ligase LUL4 [Triticum urartu] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A452Z1W9 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG042270.