Basic Information
Locus ID:
gene:TRIDC1BG039630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal_L40e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 434238612 | 434239367 | + | gene:TRIDC1BG039630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.90 | 15,953.40 Da | 39.05 | 85.54 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 76 | 4.37211E-53 | - |
| Pfam | PF01020 | Ribosomal L40e family | 84 | 132 | 3.0E-29 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 1.1E-31 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 2.96E-32 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 84 | 135 | 7.87E-17 | IPR011332 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 81 | 9.6E-44 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 84 | 134 | 6.5E-27 | IPR038587 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 3.2E-33 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 83 | 134 | 8.1E-31 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 28.949604 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 1.1E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 1.1E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 1.1E-36 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037438720.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| B9DHA6 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YZ52 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG039630.