Basic Information
Locus ID:
gene:TRIDC1BG036150
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 399221230 | 399222623 | - | gene:TRIDC1BG036150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 17,217.62 Da | 25.37 | 104.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 2 | 76 | 1.33877E-50 | - |
| CDD | cd01806 | Ubl_NEDD8 | 79 | 152 | 7.0465E-45 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 79 | 150 | 1.7E-27 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 1.4E-33 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 76 | 2.69E-33 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 78 | 150 | 1.33E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 78 | 153 | 1.3E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 2.1E-45 | - |
| SMART | SM00213 | ubq_7 | 77 | 148 | 7.1E-27 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 7.8E-34 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 29.29801 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 77 | 152 | 25.226009 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 103 | 128 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 8.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 8.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 8.0E-39 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_037474164.1 | ubiquitin-NEDD8-like protein RUB2 [Triticum dicoccoides] | 0 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B5Y0U0 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG036150.