Basic Information
Locus ID:
gene:TRIDC1BG036050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 398409192 | 398410675 | - | gene:TRIDC1BG036050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 25,742.91 Da | 65.11 | 76.22 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 170 | 213 | 1.42744E-15 | - |
| Pfam | PF13639 | Ring finger domain | 170 | 213 | 9.9E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 223 | 3.28E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 217 | 1.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 212 | 3.0E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 167 | 221 | 0.003 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 213 | 12.84335 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037466378.1 | probable E3 ubiquitin-protein ligase ATL44 [Triticum dicoccoides] | 0 |
| Q8LC69 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A452YS48 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG036050.