Basic Information
Locus ID:
gene:TRIDC1BG032970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 360552564 | 360557032 | + | gene:TRIDC1BG032970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 52,553.38 Da | 48.79 | 84.51 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 160 | 221 | 3.3E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 21 | 105 | 9.2E-18 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 18 | 253 | 7.88E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 294 | 355 | 3.81E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 365 | 8.5E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 125 | 252 | 5.6E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 11 | 121 | 3.7E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 115 | 27.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 7.8E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 299 | 348 | 3.4E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 200 | 232 | 0.0013 | IPR002110 |
| SMART | SM00248 | ANK_2a | 16 | 45 | 3.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 49 | 78 | 0.0016 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 299 | 349 | 10.202563 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 200 | 226 | 10.89985 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 200 | 226 | 10.869141 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 12.87639 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 16 | 47 | 13.920248 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 49 | 81 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 186 | 12.195709 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 104 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 104 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 16 | 48 | 15.0399 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 314 | 323 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037464069.1 | probable E3 ubiquitin-protein ligase XBOS33 [Triticum dicoccoides] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YXK7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG032970.