Basic Information
Locus ID:
gene:TRIDC1BG027250
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 287871017 | 287881218 | + | gene:TRIDC1BG027250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 57,675.78 Da | 30.41 | 84.59 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16656 | RING-Ubox_PRP19 | 2 | 54 | 1.65778E-27 | - |
| CDD | cd00200 | WD40 | 223 | 510 | 2.99901E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 510 | 0.058 | IPR001680 |
| Pfam | PF08606 | Prp19/Pso4-like | 66 | 129 | 1.6E-30 | IPR013915 |
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 421 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 336 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 290 | 1.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 220 | 510 | 1.81E-62 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 51 | 6.18E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 512 | 1.3E-88 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | 3.6E-24 | IPR013083 |
| SMART | SM00320 | WD40_4 | 207 | 249 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 291 | 6.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 380 | 0.89 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 1 | 66 | 3.0E-19 | IPR003613 |
| SMART | SM00320 | WD40_4 | 297 | 336 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 511 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 1.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 291 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 430 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 389 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 70 | 25.618914 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 291 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 345 | 9.439068 | IPR001680 |
| Coils | Coil | Coil | 115 | 135 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.1 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_037405910.1 | pre-mRNA-processing factor 19 isoform X2 [Triticum dicoccoides] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D5S088 | Pre-mRNA-processing factor 19 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG027250.