Basic Information
Locus ID:
gene:TRIDC1BG027030
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA / Hh protein intein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 286655068 | 286656981 | + | gene:TRIDC1BG027030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 67,422.92 Da | 56.39 | 72.00 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 6 | 51 | 3.43776E-8 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 520 | 612 | 1.6E-20 | IPR032838 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 6 | 50 | 2.4E-5 | IPR018957 |
| Pfam | PF00092 | von Willebrand factor type A domain | 170 | 353 | 1.9E-21 | IPR002035 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 57 | 2.65E-9 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 166 | 355 | 2.09E-33 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 66 | 5.2E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 170 | 356 | 3.5E-45 | IPR036465 |
| SMART | SM00327 | VWA_4 | 168 | 353 | 4.8E-24 | IPR002035 |
| SMART | SM00184 | ring_2 | 6 | 50 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 6 | 51 | 10.527129 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 170 | 355 | 15.729731 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 627 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037450417.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YV78 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG027030.