Basic Information
Locus ID:
gene:TRIDC1BG026960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 285588477 | 285594297 | - | gene:TRIDC1BG026960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 54,175.88 Da | 38.71 | 74.95 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 330 | 4.39354E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 147 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 194 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 241 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 45 | 3.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 329 | 1.97E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 100 | 343 | 1.5E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 99 | 7.8E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 6 | 45 | 5.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 147 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 195 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 241 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 92 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 47 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 149 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 156 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 199 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 47 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 250 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 243 | 11.971952 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 134 | 148 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 134 | 148 | 3.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 485 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20330.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037450376.1 | WD repeat-containing protein 70-like [Triticum dicoccoides] | 0 |
| Q0VA16 | WD repeat-containing protein 70 OS=Xenopus tropicalis OX=8364 GN=wdr70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YWB9 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG026960.