halophFGD

Basic Information

Locus ID: gene:TRIDC1BG020800

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: RING-like zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
1B	172787282	172791591	+	gene:TRIDC1BG020800

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.02	54,977.07 Da	48.67	89.20	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	426	467	2.8E-12	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	418	473	3.21E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	408	473	2.9E-18	IPR013083
SMART	SM00744	ringv_2	425	467	0.0087	IPR011016
SMART	SM00184	ring_2	426	466	1.1E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	426	467	12.25323	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	117	139	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	117	167	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	159	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	240	260	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32600.1	RING/U-box superfamily protein.
RefSeq	XP_037457550.1	E3 ubiquitin-protein ligase At1g12760-like [Triticum dicoccoides]
Swiss-Prot	Q9LN71	E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1
TrEMBL	A0A3B5XWV5	RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC1BG020800.