Basic Information
Locus ID:
gene:TRIDC1BG019640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger and transmembrane domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 161985134 | 161989254 | + | gene:TRIDC1BG019640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 44,752.29 Da | 47.75 | 89.43 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16532 | RING-HC_RNFT1_like | 344 | 383 | 1.80799E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 343 | 386 | 2.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 336 | 388 | 9.98E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 392 | 2.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 345 | 382 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 383 | 13.462976 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 360 | 369 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 108 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037456921.1 | RING finger and transmembrane domain-containing protein 2-like [Triticum dicoccoides] | 0 |
| Q96EX2 | E3 ubiquitin-protein ligase RNFT2 OS=Homo sapiens OX=9606 GN=RNFT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B5YVC0 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG019640.