halophFGD

Basic Information

Locus ID: gene:TRIDC1BG018750

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: HECT-domain (ubiquitin-transferase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
1B	151358407	151370647	+	gene:TRIDC1BG018750

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.53	117,111.12 Da	40.48	94.96	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	668	1028	4.31535E-150	IPR000569
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	725	1030	4.3E-93	IPR000569
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	664	1022	1.44E-108	IPR035983
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	912	1029	9.0E-40	-
Gene3D	G3DSA:3.30.2160.10	Hect, E3 ligase catalytic domain	794	873	1.1E-78	-
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	670	908	1.1E-78	-
SMART	SM00119	hect_3	687	1030	1.5E-131	IPR000569
ProSiteProfiles	PS50237	HECT domain profile.	689	1030	87.646828	IPR000569

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10589 (ubiquitin-protein ligase E3 C [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G17205.1	ubiquitin protein ligase 6.
RefSeq	XP_037456374.1	E3 ubiquitin-protein ligase UPL6-like isoform X1 [Triticum dicoccoides]
Swiss-Prot	Q8RWB8	E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1
TrEMBL	A0A3B5YTZ6	HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC1BG018750.