Basic Information
Locus ID:
gene:TRIDC1BG017930
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 142304823 | 142311531 | - | gene:TRIDC1BG017930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 46,302.49 Da | 69.16 | 46.75 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 18 | 64 | 1.44482E-7 | - |
| Pfam | PF13639 | Ring finger domain | 17 | 64 | 1.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 66 | 1.24E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 69 | 9.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 18 | 63 | 6.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 18 | 64 | 11.899158 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05545.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037456018.1 | E3 ubiquitin-protein ligase RFI2-like [Triticum dicoccoides] | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YUY7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG017930.