Basic Information
Locus ID:
gene:TRIDC1BG016900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 131262838 | 131267281 | - | gene:TRIDC1BG016900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 91,466.18 Da | 42.29 | 85.71 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 403 | 440 | 6.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 714 | 7.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 666 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 224 | 265 | 3.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 349 | 3.3E-27 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 714 | 3.66E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 680 | 832 | 1.17E-12 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 404 | 511 | 7.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 574 | 673 | 8.3E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 403 | 3.2E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 674 | 836 | 1.6E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 282 | 7.9E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 628 | 667 | 9.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 8.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 765 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 106 | 8.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 441 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 715 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 625 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 265 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 783 | 832 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 345 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 156 | 3.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 635 | 676 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 683 | 714 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 274 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 409 | 440 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 683 | 724 | 12.17936 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 702 | 716 | 8.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 252 | 266 | 8.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 93 | 107 | 8.8E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_037455470.1 | elongator complex protein 2-like [Triticum dicoccoides] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YUP5 | Elongator complex protein 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG016900.