Basic Information
Locus ID:
gene:TRIDC1BG009870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 60701777 | 60706412 | - | gene:TRIDC1BG009870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 41,110.97 Da | 51.09 | 88.47 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 187 | 312 | 5.97434E-50 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 115 | 154 | 9.0E-6 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 200 | 311 | 1.3E-10 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 163 | 2.43E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 27 | 366 | 2.55E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 28 | 367 | 7.6E-58 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 181 | 6.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 154 | 4.0E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 229 | 311 | 3.6E-10 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 198 | 357 | 12.32641 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 155 | 11.66311 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 130 | 139 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05120.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_044323466.1 | DNA repair protein RAD16-like [Triticum aestivum] | 0 |
| P31244 | DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YRZ4 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG009870.