Basic Information
Locus ID:
gene:TRIDC1BG004840
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 21992881 | 21995709 | + | gene:TRIDC1BG004840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 41,623.94 Da | 52.18 | 79.82 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13606 | Ankyrin repeat | 133 | 158 | 0.002 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 21 | 120 | 5.6E-14 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 315 | 1.09E-5 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 2 | 188 | 3.96E-40 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 81 | 3.1E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 84 | 187 | 2.0E-23 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 319 | 2.1E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 95 | 124 | 1.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 132 | 161 | 0.94 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 0.058 | IPR002110 |
| SMART | SM00248 | ANK_2a | 16 | 45 | 3.6E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 132 | 158 | 11.08139 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 16 | 48 | 10.33894 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 16 | 43 | 9.197662 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 95 | 120 | 12.03652 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 132 | 164 | 12.12851 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 95 | 127 | 12.71613 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 261 | 310 | 9.391148 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 366 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28840.2 | XB3 ortholog 1 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037447549.1 | E3 ubiquitin-protein ligase XB3-like [Triticum dicoccoides] | 0 |
| Q65XV2 | E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica OX=39947 GN=XB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YSH2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG004840.