Basic Information
Locus ID:
gene:TRIDC1BG004350
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 19556216 | 19563120 | - | gene:TRIDC1BG004350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 38,014.24 Da | 40.16 | 67.11 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 137 | 0.0068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 65 | 94 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 269 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 26 | 51 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 302 | 8.75E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 338 | 1.3E-111 | IPR015943 |
| SMART | SM00320 | WD40_4 | 57 | 95 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 269 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 220 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 52 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 176 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 20 | 61 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 20 | 53 | 8.702878 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 63 | 94 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 104 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 105 | 139 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 105 | 146 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 278 | 9.806668 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 124 | 138 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 256 | 270 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 39 | 53 | 1.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037447258.1 | protein RAE1-like [Triticum dicoccoides] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B5YQW9 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG004350.