Basic Information
Locus ID:
gene:TRIDC1BG003490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1B | 15351585 | 15356752 | + | gene:TRIDC1BG003490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 71,297.91 Da | 56.74 | 61.70 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 485 | 529 | 2.67263E-7 | - |
| CDD | cd15489 | PHD_SF | 586 | 626 | 6.13633E-5 | - |
| Pfam | PF12738 | twin BRCT domain | 19 | 80 | 9.0E-22 | IPR001357 |
| Pfam | PF13639 | Ring finger domain | 484 | 530 | 1.8E-8 | IPR001841 |
| SUPERFAMILY | SSF52113 | BRCT domain | 15 | 99 | 3.93E-22 | IPR036420 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 583 | 629 | 8.64E-8 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 476 | 536 | 1.08E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 462 | 552 | 7.8E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 631 | 7.6E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 12 | 98 | 1.0E-24 | IPR036420 |
| SMART | SM00292 | BRCT_7 | 12 | 88 | 6.4E-11 | IPR001357 |
| SMART | SM00184 | ring_2 | 485 | 529 | 8.5E-7 | IPR001841 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 17 | 98 | 16.70582 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 485 | 530 | 12.740079 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 586 | 626 | - | IPR019786 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 501 | 510 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 403 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67180.1 | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein. | 0 |
| RefSeq | XP_037446718.1 | uncharacterized protein LOC119316493 isoform X1 [Triticum dicoccoides] | 0 |
| O04251 | BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3 | 0 | |
| TrEMBL | A0A3B5YRX8 | BRCT domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1BG003490.