Basic Information
Locus ID:
gene:TRIDC1AG065070
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
NLE (NUC135) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 591378014 | 591382966 | - | gene:TRIDC1AG065070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 52,977.45 Da | 32.07 | 79.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 152 | 478 | 8.62168E-86 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 351 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 233 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 437 | 6.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 185 | 2.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 478 | 4.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 273 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 143 | 2.6E-8 | IPR001680 |
| Pfam | PF08154 | NLE (NUC135) domain | 18 | 77 | 5.0E-11 | IPR012972 |
| Pfam | PF00400 | WD domain, G-beta repeat | 361 | 395 | 7.9E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 107 | 315 | 8.7E-61 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 337 | 478 | 1.5E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 480 | 1.9E-131 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 274 | 2.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 185 | 1.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 395 | 1.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 437 | 3.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 352 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 233 | 3.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 5.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 479 | 2.2E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 283 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 405 | 446 | 16.690819 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 404 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 185 | 11.260138 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 363 | 395 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 279 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 152 | 18.261473 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 242 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 194 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 196 | 236 | 9.915599 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 146 | 14.107395 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 480 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 447 | 480 | 14.186485 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 405 | 439 | 13.342854 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 130 | 144 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 424 | 438 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 261 | 275 | - | IPR019775 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 424 | 438 | 9.7E-7 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 461 | 478 | 9.7E-7 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 405 | 421 | 9.7E-7 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 382 | 396 | 4.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 4.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 424 | 438 | 4.6E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52820.1 | WD-40 repeat family protein / notchless protein, putative. | 0 |
| RefSeq | XP_037429668.1 | notchless protein homolog [Triticum dicoccoides] | 0 |
| Q9FLX9 | Notchless protein homolog OS=Arabidopsis thaliana OX=3702 GN=NLE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Y7L9 | NLE domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG065070.