Basic Information
Locus ID:
gene:TRIDC1AG062430
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
CDPK6
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 579445692 | 579449299 | - | gene:TRIDC1AG062430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 52,052.54 Da | 39.66 | 85.49 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 371 | 430 | 8.42773E-18 | IPR002048 |
| CDD | cd00051 | EFh | 442 | 489 | 3.06446E-9 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 65 | 322 | 1.69871E-133 | - |
| Pfam | PF13499 | EF-hand domain pair | 371 | 431 | 1.3E-11 | IPR002048 |
| Pfam | PF00036 | EF hand | 443 | 469 | 4.1E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 65 | 323 | 2.4E-72 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 363 | 489 | 1.36E-36 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 346 | 2.02E-84 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 340 | 432 | 9.7E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 151 | 330 | 1.7E-58 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 349 | 493 | 9.7E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 67 | 150 | 3.3E-26 | - |
| SMART | SM00054 | efh_1 | 370 | 398 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 442 | 470 | 0.001 | IPR002048 |
| SMART | SM00220 | serkin_6 | 65 | 323 | 2.8E-98 | IPR000719 |
| SMART | SM00054 | efh_1 | 406 | 434 | 0.002 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 65 | 323 | 48.230167 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 366 | 401 | 14.401823 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 402 | 437 | 11.75176 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 14.736568 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 451 | 463 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 185 | 197 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 379 | 391 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 71 | 100 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 415 | 427 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 55 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23650.1 | calcium-dependent protein kinase 6. Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. | 0 |
| RefSeq | XP_044984594.1 | calcium-dependent protein kinase 15 [Hordeum vulgare subsp. vulgare] | 0 |
| Q6I587 | Calcium-dependent protein kinase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453A1G2 | Calcium-dependent protein kinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG062430.